HL_8YDF_009

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8YDF|1|1|A|311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDF_009 not in the Motif Atlas

Geometric match to HL_8B0X_041

Geometric discrepancy: 0.0908

The information below is about HL_8B0X_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8YDF|1|1|C|305
8YDF|1|1|U|306
8YDF|1|1|G|307
8YDF|1|1|G|308
8YDF|1|1|A|309
8YDF|1|1|A|310
8YDF|1|1|A|311
8YDF|1|1|G|312

Current chains

Chain 1

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L24