HL_8YDF_014

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

8YDF|1|1|C|490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDF_014 not in the Motif Atlas

Geometric match to HL_8B0X_047

Geometric discrepancy: 0.0922

The information below is about HL_8B0X_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8YDF|1|1|C|487
8YDF|1|1|G|488
8YDF|1|1|G|489
8YDF|1|1|C|490
8YDF|1|1|G|491
8YDF|1|1|A|492
8YDF|1|1|G|493

Current chains

Chain 1

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L22