HL_8YDF_027

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8YDF|1|1|U|1066, 8YDF|1|1|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDF|1|1|C|1064
8YDF|1|1|U|1065
8YDF|1|1|U|1066
8YDF|1|1|A|1067
8YDF|1|1|G|1068
8YDF|1|1|A|1069
8YDF|1|1|A|1070
8YDF|1|1|G|1071
8YDF|1|1|C|1072
8YDF|1|1|A|1073
8YDF|1|1|G|1074

Current chains

Chain 1

23S rRNA

Nearby chains

Chain i

50S ribosomal protein L11