HL_8YDF_038

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAGG

Length

4 nucleotides

Bulged bases

8YDF|1|1|A|1566

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDF_038 not in the Motif Atlas

Geometric match to HL_5FQ5_002

Geometric discrepancy: 0.1783

The information below is about HL_5FQ5_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8YDF|1|1|C|1565
8YDF|1|1|A|1566
8YDF|1|1|G|1567
8YDF|1|1|G|1568

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2