HL_8YDF_040

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

8YDF|1|1|A|1634

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDF_040 not in the Motif Atlas

Geometric match to HL_8B0X_069

Geometric discrepancy: 0.1476

The information below is about HL_8B0X_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8YDF|1|1|A|1630
8YDF|1|1|G|1631
8YDF|1|1|A|1632
8YDF|1|1|G|1633
8YDF|1|1|A|1634
8YDF|1|1|A|1635
8YDF|1|1|U|1636

Current chains

Chain 1

23S rRNA

Nearby chains