HL_8YDF_055

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDF_055 not in the Motif Atlas

Geometric match to HL_8B0X_083

Geometric discrepancy: 0.1461

The information below is about HL_8B0X_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

8YDF|1|1|U|2324
8YDF|1|1|G|2325
8YDF|1|1|C|2326
8YDF|1|1|A|2327
8YDF|1|1|A|2328
8YDF|1|1|U|2329
8YDF|1|1|G|2330
8YDF|1|1|G|2331

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain m

50S ribosomal protein L16

Chain w

50S ribosomal protein L27