HL_8YDF_067
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GAAGACGAC
- Length
- 9 nucleotides
- Bulged bases
- 8YDF|1|1|A|2820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDF_067 not in the Motif Atlas
- Geometric match to HL_8B0X_095
- Geometric discrepancy: 0.1618
- The information below is about HL_8B0X_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37889.1
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8YDF|1|1|G|2819
8YDF|1|1|A|2820
8YDF|1|1|A|2821
8YDF|1|1|G|2822
8YDF|1|1|A|2823
8YDF|1|1|C|2824
8YDF|1|1|G|2825
8YDF|1|1|A|2826
8YDF|1|1|C|2827
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain n
- 50S ribosomal protein L17
Coloring options: