HL_8YDF_080

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8YDF|1|3|A|344

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDF_080 not in the Motif Atlas

Geometric match to HL_8OI5_039

Geometric discrepancy: 0.1583

The information below is about HL_8OI5_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8YDF|1|3|C|342
8YDF|1|3|U|343
8YDF|1|3|A|344
8YDF|1|3|C|345
8YDF|1|3|G|346
8YDF|1|3|G|347

Current chains

Chain 3

16S rRNA

Nearby chains

Chain k

50S ribosomal protein L14

Chain p

50S ribosomal protein L19