HL_8YDI_007

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

8YDI|1|1|C|228

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDI_007 not in the Motif Atlas

Geometric match to HL_8B0X_039

Geometric discrepancy: 0.2592

The information below is about HL_8B0X_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63151.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

2

Unit IDs

8YDI|1|1|C|225
8YDI|1|1|A|226
8YDI|1|1|A|227
8YDI|1|1|C|228
8YDI|1|1|C|229
8YDI|1|1|G|230

Current chains

Chain 1

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15