HL_8YDI_009

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8YDI|1|1|A|311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDI_009 not in the Motif Atlas

Geometric match to HL_8B0X_041

Geometric discrepancy: 0.0907

The information below is about HL_8B0X_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

8YDI|1|1|C|305
8YDI|1|1|U|306
8YDI|1|1|G|307
8YDI|1|1|G|308
8YDI|1|1|A|309
8YDI|1|1|A|310
8YDI|1|1|A|311
8YDI|1|1|G|312

Current chains

Chain 1

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L24