3D structure

PDB id
8YDI (explore in PDB, NAKB, or RNA 3D Hub)
Description
E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
Experimental method
ELECTRON MICROSCOPY
Resolution
4.6 Å

Loop

Sequence
CGGCGAG
Length
7 nucleotides
Bulged bases
8YDI|1|1|C|490
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8YDI_014 not in the Motif Atlas
Geometric match to HL_8B0X_047
Geometric discrepancy: 0.0923
The information below is about HL_8B0X_047
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

8YDI|1|1|C|487
8YDI|1|1|G|488
8YDI|1|1|G|489
8YDI|1|1|C|490
8YDI|1|1|G|491
8YDI|1|1|A|492
8YDI|1|1|G|493

Current chains

Chain 1
23S rRNA

Nearby chains

Chain s
50S ribosomal protein L22

Coloring options:


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