HL_8YDI_017

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

8YDI|1|1|A|613, 8YDI|1|1|U|615

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDI_017 not in the Motif Atlas

Geometric match to HL_4WRT_001

Geometric discrepancy: 0.3177

The information below is about HL_4WRT_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19413.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

7

Unit IDs

8YDI|1|1|C|611
8YDI|1|1|G|612
8YDI|1|1|A|613
8YDI|1|1|A|614
8YDI|1|1|U|615
8YDI|1|1|A|616
8YDI|1|1|G|617

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L4