HL_8YDI_025

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

8YDI|1|1|U|958, 8YDI|1|1|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDI_025 not in the Motif Atlas

Geometric match to HL_9DFE_025

Geometric discrepancy: 0.1343

The information below is about HL_9DFE_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8YDI|1|1|U|955
8YDI|1|1|G|956
8YDI|1|1|C|957
8YDI|1|1|U|958
8YDI|1|1|A|959
8YDI|1|1|A|960
8YDI|1|1|C|961
8YDI|1|1|G|962

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 2

5S rRNA

Chain m

50S ribosomal protein L16