HL_8YDI_031

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDI_031 not in the Motif Atlas

Geometric match to HL_8B0X_060

Geometric discrepancy: 0.0867

The information below is about HL_8B0X_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8YDI|1|1|G|1281
8YDI|1|1|U|1282
8YDI|1|1|G|1283
8YDI|1|1|A|1284
8YDI|1|1|A|1285
8YDI|1|1|A|1286
8YDI|1|1|A|1287
8YDI|1|1|G|1288
8YDI|1|1|C|1289

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain n

50S ribosomal protein L17

Chain s

50S ribosomal protein L22