HL_8YDI_034

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8YDI|1|1|U|1396, 8YDI|1|1|U|1397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDI_034 not in the Motif Atlas

Geometric match to HL_4V9F_037

Geometric discrepancy: 0.135

The information below is about HL_4V9F_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8YDI|1|1|G|1389
8YDI|1|1|U|1390
8YDI|1|1|U|1391
8YDI|1|1|A|1392
8YDI|1|1|A|1393
8YDI|1|1|U|1394
8YDI|1|1|A|1395
8YDI|1|1|U|1396
8YDI|1|1|U|1397
8YDI|1|1|C|1398

Current chains

Chain 1

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L23