HL_8YDI_041

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8YDI|1|1|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDI_041 not in the Motif Atlas

Geometric match to HL_1I6U_001

Geometric discrepancy: 0.1983

The information below is about HL_1I6U_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8YDI|1|1|C|1691
8YDI|1|1|U|1692
8YDI|1|1|U|1693
8YDI|1|1|C|1694
8YDI|1|1|G|1695
8YDI|1|1|G|1696

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2