HL_8YDI_045

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

8YDI|1|1|A|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDI_045 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.2128

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8YDI|1|1|C|1806
8YDI|1|1|G|1807
8YDI|1|1|A|1808
8YDI|1|1|A|1809
8YDI|1|1|A|1810
8YDI|1|1|G|1811

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2

Chain x

50S ribosomal protein L28