HL_8YDI_059

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDI_059 not in the Motif Atlas

Geometric match to HL_4WF9_056

Geometric discrepancy: 0.1136

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8YDI|1|1|A|2471
8YDI|1|1|G|2472
8YDI|1|1|U|2473
8YDI|1|1|U|2474
8YDI|1|1|C|2475
8YDI|1|1|A|2476
8YDI|1|1|U|2477
8YDI|1|1|A|2478
8YDI|1|1|U|2479

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 5

tRNA(Phe)

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6