HL_8YDI_070
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CAUGCCG
- Length
- 7 nucleotides
- Bulged bases
- 8YDI|1|2|G|41
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDI_070 not in the Motif Atlas
- Geometric match to HL_8B0X_097
- Geometric discrepancy: 0.1194
- The information below is about HL_8B0X_097
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_59381.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8YDI|1|2|C|38
8YDI|1|2|A|39
8YDI|1|2|U|40
8YDI|1|2|G|41
8YDI|1|2|C|42
8YDI|1|2|C|43
8YDI|1|2|G|44
Current chains
- Chain 2
- 5S rRNA
Nearby chains
- Chain 1
- 23S rRNA
- Chain A
- 50S ribosomal protein L31
- Chain e
- 50S ribosomal protein L5
- Chain o
- 50S ribosomal protein L18
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