HL_8YDI_077
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GGUAACGGC
- Length
- 9 nucleotides
- Bulged bases
- 8YDI|1|3|G|266
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDI_077 not in the Motif Atlas
- Geometric match to HL_8B0X_005
- Geometric discrepancy: 0.1486
- The information below is about HL_8B0X_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87268.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
8YDI|1|3|G|259
8YDI|1|3|G|260
8YDI|1|3|U|261
8YDI|1|3|A|262
8YDI|1|3|A|263
8YDI|1|3|C|264
8YDI|1|3|G|265
8YDI|1|3|G|266
8YDI|1|3|C|267
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain V
- 30S ribosomal protein S17
- Chain Y
- 30S ribosomal protein S20
Coloring options: