HL_8YDI_083

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8YDI|1|3|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDI_083 not in the Motif Atlas

Geometric match to HL_8B0X_011

Geometric discrepancy: 0.1778

The information below is about HL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

8YDI|1|3|G|462
8YDI|1|3|U|463
8YDI|1|3|U|464
8YDI|1|3|A|465
8YDI|1|3|A|466
8YDI|1|3|U|467
8YDI|1|3|A|468
8YDI|1|3|C|469
8YDI|1|3|C|470

Current chains

Chain 3

16S rRNA

Nearby chains