HL_8YDI_092
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GAUGCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 8YDI|1|3|G|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDI_092 not in the Motif Atlas
- Geometric match to HL_8B0X_019
- Geometric discrepancy: 0.0893
- The information below is about HL_8B0X_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8YDI|1|3|G|963
8YDI|1|3|A|964
8YDI|1|3|U|965
8YDI|1|3|G|966
8YDI|1|3|C|967
8YDI|1|3|A|968
8YDI|1|3|A|969
8YDI|1|3|C|970
8YDI|1|3|G|971
8YDI|1|3|C|972
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 5
- tRNA(Phe)
- Chain 6
- tRNA(fMet)
- Chain N
- 30S ribosomal protein S9
- Chain O
- 30S ribosomal protein S10
- Chain R
- 30S ribosomal protein S13
Coloring options: