HL_8YDI_099
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDI_099 not in the Motif Atlas
- Geometric match to HL_4LFB_029
- Geometric discrepancy: 0.1263
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_93658.1
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8YDI|1|3|C|1314
8YDI|1|3|U|1315
8YDI|1|3|G|1316
8YDI|1|3|C|1317
8YDI|1|3|A|1318
8YDI|1|3|A|1319
8YDI|1|3|C|1320
8YDI|1|3|U|1321
8YDI|1|3|C|1322
8YDI|1|3|G|1323
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain R
- 30S ribosomal protein S13
- Chain S
- 30S ribosomal protein S14
- Chain X
- 30S ribosomal protein S19
Coloring options: