HL_8YDI_107
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDI_107 not in the Motif Atlas
- Geometric match to HL_8B0X_031
- Geometric discrepancy: 0.0997
- The information below is about HL_8B0X_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
8YDI|1|6|G|31
8YDI|1|6|C|32
8YDI|1|6|U|33
8YDI|1|6|C|34
8YDI|1|6|A|35
8YDI|1|6|U|36
8YDI|1|6|A|37
8YDI|1|6|A|38
8YDI|1|6|C|39
Current chains
- Chain 6
- tRNA(fMet)
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- mRNA
- Chain 7
- Transfer RNA; tRNA
- Chain N
- 30S ribosomal protein S9
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