HL_8YDI_111

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDI_111 not in the Motif Atlas

Geometric match to HL_8WND_005

Geometric discrepancy: 0.3304

The information below is about HL_8WND_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

8YDI|1|7|G|53
8YDI|1|7|U|54
8YDI|1|7|U|55
8YDI|1|7|C|56
8YDI|1|7|A|57
8YDI|1|7|A|58
8YDI|1|7|A|59
8YDI|1|7|U|60
8YDI|1|7|C|61

Current chains

Chain 7

tRNA(fMet)

Nearby chains

Chain 1

23S rRNA