HL_8YDJ_007

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

8YDJ|1|1|C|228

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDJ_007 not in the Motif Atlas

Geometric match to HL_1NBS_006

Geometric discrepancy: 0.3004

The information below is about HL_1NBS_006

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8YDJ|1|1|C|225
8YDJ|1|1|A|226
8YDJ|1|1|A|227
8YDJ|1|1|C|228
8YDJ|1|1|C|229
8YDJ|1|1|G|230

Current chains

Chain 1

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15