HL_8YDJ_029

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GACGCUUAUGCGUU

Length

14 nucleotides

Bulged bases

8YDJ|1|1|U|1174, 8YDJ|1|1|A|1175

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDJ|1|1|G|1168
8YDJ|1|1|A|1169
8YDJ|1|1|C|1170
8YDJ|1|1|G|1171
8YDJ|1|1|C|1172
8YDJ|1|1|U|1173
8YDJ|1|1|U|1174
8YDJ|1|1|A|1175
8YDJ|1|1|U|1176
8YDJ|1|1|G|1177
8YDJ|1|1|C|1178
8YDJ|1|1|G|1179
8YDJ|1|1|U|1180
8YDJ|1|1|U|1181

Current chains

Chain 1

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15