HL_8YDJ_035

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

8YDJ|1|1|G|1452, 8YDJ|1|1|A|1453, 8YDJ|1|1|C|1454, 8YDJ|1|1|U|1460

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDJ|1|1|G|1450
8YDJ|1|1|C|1451
8YDJ|1|1|G|1452
8YDJ|1|1|A|1453
8YDJ|1|1|C|1454
8YDJ|1|1|G|1455
8YDJ|1|1|G|1456
8YDJ|1|1|U|1457
8YDJ|1|1|U|1458
8YDJ|1|1|G|1459
8YDJ|1|1|U|1460
8YDJ|1|1|C|1461

Current chains

Chain 1

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17