HL_8YDJ_046

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

8YDJ|1|1|C|1870

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDJ_046 not in the Motif Atlas

Geometric match to HL_8G9Z_003

Geometric discrepancy: 0.3205

The information below is about HL_8G9Z_003

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

8YDJ|1|1|C|1868
8YDJ|1|1|G|1869
8YDJ|1|1|C|1870
8YDJ|1|1|A|1871
8YDJ|1|1|A|1872
8YDJ|1|1|G|1873

Current chains

Chain 1

23S rRNA

Nearby chains