HL_8YDJ_064

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UGCCAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDJ_064 not in the Motif Atlas

Geometric match to HL_9E6Q_063

Geometric discrepancy: 0.1317

The information below is about HL_9E6Q_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12125.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8YDJ|1|1|U|2701
8YDJ|1|1|G|2702
8YDJ|1|1|C|2703
8YDJ|1|1|C|2704
8YDJ|1|1|A|2705
8YDJ|1|1|A|2706

Current chains

Chain 1

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17