HL_8YDJ_067

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

8YDJ|1|1|A|2820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDJ_067 not in the Motif Atlas

Geometric match to HL_8B0X_095

Geometric discrepancy: 0.1929

The information below is about HL_8B0X_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8YDJ|1|1|G|2819
8YDJ|1|1|A|2820
8YDJ|1|1|A|2821
8YDJ|1|1|G|2822
8YDJ|1|1|A|2823
8YDJ|1|1|C|2824
8YDJ|1|1|G|2825
8YDJ|1|1|A|2826
8YDJ|1|1|C|2827

Current chains

Chain 1

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain n

50S ribosomal protein L17