HL_8YDJ_084

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

8YDJ|1|3|U|619

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDJ_084 not in the Motif Atlas

Geometric match to HL_8B0X_013

Geometric discrepancy: 0.1881

The information below is about HL_8B0X_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8YDJ|1|3|G|617
8YDJ|1|3|C|618
8YDJ|1|3|U|619
8YDJ|1|3|C|620
8YDJ|1|3|A|621
8YDJ|1|3|A|622
8YDJ|1|3|C|623

Current chains

Chain 3

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S4

Chain U

30S ribosomal protein S16