HL_8YDJ_103
3D structure
- PDB id
- 8YDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GAUUGAAAAUC
- Length
- 11 nucleotides
- Bulged bases
- 8YDJ|1|5|U|33, 8YDJ|1|5|G|34
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDJ|1|5|G|30
8YDJ|1|5|A|31
8YDJ|1|5|U|32
8YDJ|1|5|U|33
8YDJ|1|5|G|34
8YDJ|1|5|A|35
8YDJ|1|5|A|36
8YDJ|1|5|A|37
8YDJ|1|5|A|38
8YDJ|1|5|U|39
8YDJ|1|5|C|40
Current chains
- Chain 5
- tRNA(Phe)
Nearby chains
- Chain 0
- Elongation factor G
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- mRNA
- Chain Q
- 30S ribosomal protein S12
- Chain h
- Viomycin
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