HL_8YLD_014

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UACAAUGUAAAUACCUUAA

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLD|1|2|U|517
8YLD|1|2|A|518
8YLD|1|2|C|519
8YLD|1|2|A|520
8YLD|1|2|A|521
8YLD|1|2|U|522
8YLD|1|2|G|523
8YLD|1|2|U|524
8YLD|1|2|A|525
8YLD|1|2|A|526
8YLD|1|2|A|527
8YLD|1|2|U|528
8YLD|1|2|A|529
8YLD|1|2|C|530
8YLD|1|2|C|531
8YLD|1|2|U|532
8YLD|1|2|U|533
8YLD|1|2|A|534
8YLD|1|2|A|535

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SW

Small ribosomal subunit protein uS4A

Chain Sd

Small ribosomal subunit protein eS24A