HL_8YLD_023

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_023 not in the Motif Atlas

Homologous match to HL_8P9A_213

Geometric discrepancy: 0.147

The information below is about HL_8P9A_213

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8YLD|1|2|A|1084
8YLD|1|2|G|1085
8YLD|1|2|A|1086
8YLD|1|2|A|1087
8YLD|1|2|A|1088
8YLD|1|2|U|1089

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SR

Small ribosomal subunit protein uS5

Chain Sb

Small ribosomal subunit protein uS8A

Chain Se

Small ribosomal subunit protein eS26A