HL_8YLD_026

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8YLD|1|2|G|1243, 8YLD|1|2|G|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_026 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.3155

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8YLD|1|2|A|1238
8YLD|1|2|U|1239
8YLD|1|2|U|1240
8YLD|1|2|G|1241
8YLD|1|2|A|1242
8YLD|1|2|G|1243
8YLD|1|2|A|1244
8YLD|1|2|G|1245
8YLD|1|2|C|1246
8YLD|1|2|U|1247

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein uS19

Chain SM

Small ribosomal subunit protein uS14A

Chain SN

Small ribosomal subunit protein eS31