HL_8YLD_061

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAUGGAAGUCGG

Length

13 nucleotides

Bulged bases

8YLD|1|A|A|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLD|1|A|C|1238
8YLD|1|A|C|1239
8YLD|1|A|A|1240
8YLD|1|A|U|1241
8YLD|1|A|G|1242
8YLD|1|A|G|1243
8YLD|1|A|A|1244
8YLD|1|A|A|1245
8YLD|1|A|G|1246
8YLD|1|A|U|1247
8YLD|1|A|C|1248
8YLD|1|A|G|1249
8YLD|1|A|G|1250

Current chains

Chain A

25S rRNA

Nearby chains

Chain x

Elongation factor 2