HL_8YLD_063
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 8YLD|1|A|G|1349, 8YLD|1|A|A|1350, 8YLD|1|A|U|1356
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLD_063 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.3475
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
8YLD|1|A|U|1347
8YLD|1|A|U|1348
8YLD|1|A|G|1349
8YLD|1|A|A|1350
8YLD|1|A|U|1351
8YLD|1|A|A|1352
8YLD|1|A|U|1353
8YLD|1|A|G|1354
8YLD|1|A|A|1355
8YLD|1|A|U|1356
8YLD|1|A|G|1357
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL4A
- Chain H
- Large ribosomal subunit protein eL6B
- Chain S
- Large ribosomal subunit protein eL18A
- Chain g
- Large ribosomal subunit protein eL32
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