HL_8YLD_065
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLD_065 not in the Motif Atlas
- Homologous match to HL_8C3A_031
- Geometric discrepancy: 0.1604
- The information below is about HL_8C3A_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8YLD|1|A|A|1462
8YLD|1|A|U|1463
8YLD|1|A|G|1464
8YLD|1|A|A|1465
8YLD|1|A|G|1466
8YLD|1|A|A|1467
8YLD|1|A|A|1468
8YLD|1|A|C|1469
8YLD|1|A|U|1470
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain R
- Large ribosomal subunit protein uL22A
- Chain T
- Large ribosomal subunit protein eL19A
- Chain f
- Large ribosomal subunit protein eL31A
Coloring options: