HL_8YLD_069

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

8YLD|1|A|U|1606, 8YLD|1|A|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_069 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.1662

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8YLD|1|A|G|1599
8YLD|1|A|U|1600
8YLD|1|A|U|1601
8YLD|1|A|A|1602
8YLD|1|A|A|1603
8YLD|1|A|G|1604
8YLD|1|A|A|1605
8YLD|1|A|U|1606
8YLD|1|A|U|1607
8YLD|1|A|C|1608

Current chains

Chain A

25S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein eL19A

Chain Z

Large ribosomal subunit protein uL23

Chain i

Large ribosomal subunit protein eL34A