HL_8YLD_071

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGUUAUCUUUU

Length

11 nucleotides

Bulged bases

8YLD|1|A|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_071 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3939

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

8YLD|1|A|A|1679
8YLD|1|A|G|1680
8YLD|1|A|U|1681
8YLD|1|A|U|1682
8YLD|1|A|A|1683
8YLD|1|A|U|1684
8YLD|1|A|C|1685
8YLD|1|A|U|1686
8YLD|1|A|U|1687
8YLD|1|A|U|1688
8YLD|1|A|U|1689

Current chains

Chain A

25S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein eL19A

Chain W

Large ribosomal subunit protein eL22A