HL_8YLD_084
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 8YLD|1|A|A|2372, 8YLD|1|A|A|2373, 8YLD|1|A|C|2374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLD_084 not in the Motif Atlas
- Homologous match to HL_8P9A_162
- Geometric discrepancy: 0.1557
- The information below is about HL_8P9A_162
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8YLD|1|A|G|2369
8YLD|1|A|G|2370
8YLD|1|A|G|2371
8YLD|1|A|A|2372
8YLD|1|A|A|2373
8YLD|1|A|C|2374
8YLD|1|A|G|2375
8YLD|1|A|G|2376
8YLD|1|A|G|2377
8YLD|1|A|C|2378
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3
- Chain g
- Large ribosomal subunit protein eL32
Coloring options: