HL_8YLD_087

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8YLD|1|A|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_087 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1692

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8YLD|1|A|C|2616
8YLD|1|A|U|2617
8YLD|1|A|G|2618
8YLD|1|A|G|2619
8YLD|1|A|G|2620
8YLD|1|A|G|2621
8YLD|1|A|C|2622
8YLD|1|A|G|2623
8YLD|1|A|G|2624

Current chains

Chain A

25S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL16

Chain d

Large ribosomal subunit protein eL29