HL_8YLD_088

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAACGAUAACGC

Length

15 nucleotides

Bulged bases

8YLD|1|A|A|2637, 8YLD|1|A|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLD|1|A|G|2632
8YLD|1|A|U|2633
8YLD|1|A|U|2634
8YLD|1|A|A|2635
8YLD|1|A|A|2636
8YLD|1|A|A|2637
8YLD|1|A|C|2638
8YLD|1|A|G|2639
8YLD|1|A|A|2640
8YLD|1|A|U|2641
8YLD|1|A|A|2642
8YLD|1|A|A|2643
8YLD|1|A|C|2644
8YLD|1|A|G|2645
8YLD|1|A|C|2646

Current chains

Chain A

25S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL16

Chain V

Large ribosomal subunit protein eL21A

Chain d

Large ribosomal subunit protein eL29