HL_8YLD_090

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_090 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.1471

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8YLD|1|A|C|2693
8YLD|1|A|A|2694
8YLD|1|A|A|2695
8YLD|1|A|A|2696
8YLD|1|A|A|2697
8YLD|1|A|G|2698
8YLD|1|A|G|2699
8YLD|1|A|G|2700

Current chains

Chain A

25S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL16

Chain V

Large ribosomal subunit protein eL21A

Chain q

Large ribosomal subunit protein eL42A