HL_8YLD_094
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- 8YLD|1|A|U|2842
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLD_094 not in the Motif Atlas
- Homologous match to HL_8P9A_172
- Geometric discrepancy: 0.3217
- The information below is about HL_8P9A_172
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52011.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8YLD|1|A|C|2840
8YLD|1|A|G|2841
8YLD|1|A|U|2842
8YLD|1|A|U|2843
8YLD|1|A|C|2844
8YLD|1|A|A|2845
8YLD|1|A|U|2846
8YLD|1|A|A|2847
8YLD|1|A|G|2848
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein uL16
- Chain o
- Large ribosomal subunit protein eL40A
- Chain x
- Elongation factor 2
Coloring options: