HL_8YLD_100
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 8YLD|1|A|G|3116, 8YLD|1|A|C|3120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLD_100 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.1577
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
8YLD|1|A|C|3110
8YLD|1|A|U|3111
8YLD|1|A|G|3112
8YLD|1|A|A|3113
8YLD|1|A|A|3114
8YLD|1|A|C|3115
8YLD|1|A|G|3116
8YLD|1|A|C|3117
8YLD|1|A|C|3118
8YLD|1|A|U|3119
8YLD|1|A|C|3120
8YLD|1|A|U|3121
8YLD|1|A|A|3122
8YLD|1|A|A|3123
8YLD|1|A|G|3124
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain K
- Large ribosomal subunit protein uL6A
- Chain Q
- Large ribosomal subunit protein uL13A
- Chain o
- Large ribosomal subunit protein eL40A
Coloring options: