HL_8YLD_100

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8YLD|1|A|G|3116, 8YLD|1|A|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_100 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1577

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8YLD|1|A|C|3110
8YLD|1|A|U|3111
8YLD|1|A|G|3112
8YLD|1|A|A|3113
8YLD|1|A|A|3114
8YLD|1|A|C|3115
8YLD|1|A|G|3116
8YLD|1|A|C|3117
8YLD|1|A|C|3118
8YLD|1|A|U|3119
8YLD|1|A|C|3120
8YLD|1|A|U|3121
8YLD|1|A|A|3122
8YLD|1|A|A|3123
8YLD|1|A|G|3124

Current chains

Chain A

25S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL6A

Chain Q

Large ribosomal subunit protein uL13A

Chain o

Large ribosomal subunit protein eL40A