HL_8YLD_103

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

8YLD|1|A|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_103 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.3

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8YLD|1|A|G|3303
8YLD|1|A|U|3304
8YLD|1|A|A|3305
8YLD|1|A|U|3306
8YLD|1|A|A|3307
8YLD|1|A|C|3308
8YLD|1|A|G|3309
8YLD|1|A|A|3310
8YLD|1|A|C|3311

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain R

Large ribosomal subunit protein uL22A