HL_8YLD_107
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLD_107 not in the Motif Atlas
- Homologous match to HL_8C3A_074
- Geometric discrepancy: 0.1311
- The information below is about HL_8C3A_074
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 302
Unit IDs
8YLD|1|B|G|88
8YLD|1|B|G|89
8YLD|1|B|U|90
8YLD|1|B|G|91
8YLD|1|B|A|92
8YLD|1|B|C|93
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- Large ribosomal subunit protein uL30A
- Chain L
- Large ribosomal subunit protein uL16
- Chain U
- Large ribosomal subunit protein eL20A
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