HL_8YOO_026

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGGGCCGAAACGAUCUC

Length

17 nucleotides

Bulged bases

8YOO|1|L5|A|1767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOO_026 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.358

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8YOO|1|L5|G|1758
8YOO|1|L5|G|1759
8YOO|1|L5|G|1760
8YOO|1|L5|G|1761
8YOO|1|L5|C|1762
8YOO|1|L5|C|1763
8YOO|1|L5|G|1764
8YOO|1|L5|A|1765
8YOO|1|L5|A|1766
8YOO|1|L5|A|1767
8YOO|1|L5|C|1768
8YOO|1|L5|G|1769
8YOO|1|L5|A|1770
8YOO|1|L5|U|1771
8YOO|1|L5|C|1772
8YOO|1|L5|U|1773
8YOO|1|L5|C|1774

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18